Exam 14: Translation and Proteins

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In what ways do the amino acid side chains interact to influence protein function?

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Higher- level folding of proteins is dependent on a variety of interactions ionic,covalent,hydrogen,hydrophobic,hydrophilic,etc ,which determine the functional three- dimensional structure of proteins.

X- ray crystallography has revealed and confirmed many details about the ribosome.All of the following are such details,EXCEPT_________ .

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Sickle- cell anemia is caused by a mutation that changes the second nucleotide of the codon from GAG to GUG.This results in a change of the amino acid from glutamic acid to valine.If the mutation affected the third nucleotide of the codon and changed GAG to GAU then the amino acid would change from a glutamic acid to aspartic acid.Would you predict this change to have the same effect?

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A change in one polar- charged amino acid to another polar- charged amino acid would be predicted to have less of a phenotype compared to a mutation that resulted in a change from a polar- charged amino acid to a nonpolar amino acid.Changes to the third nucleotide of a codon are often less damaging than changes to the first or second nucleotide.

Translation in bacterial and eukaryotic cells has many similarities,but there are also several key differences.Which of the following is one of those differences that is seen in eukaryotes?

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List at least three posttranslational modifications known to occur as a newly synthesized protein matures.

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By their experimentation using the Neurospora fungus,Beadle and Tatum were able to propose the far- reaching hypothesis that _________ .

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The following table presents the effect of different media on the growth response of tryptophan mutations in Salmonella typhimurium + = growth,- = no growth). The following table presents the effect of different media on the growth response of tryptophan mutations in Salmonella typhimurium + = growth,- = no growth).   a)Construct the biochemical pathway for the compounds IGP,AA,IN,and TRY based on these data. b)Place strains of bacteria mutations)in the appropriate steps in the pathway. c)In bacteria it is often possible to make partial diploid strains.Assume that a diploid strain was made contain complete genomes of the trp- 2 and trp- 1 strains.Would this diploid strain be able to grow on the unsupplemented medium? Explain your answer. a)Construct the biochemical pathway for the compounds IGP,AA,IN,and TRY based on these data. b)Place strains of bacteria mutations)in the appropriate steps in the pathway. c)In bacteria it is often possible to make partial diploid strains.Assume that a diploid strain was made contain complete genomes of the trp- 2 and trp- 1 strains.Would this diploid strain be able to grow on the unsupplemented medium? Explain your answer.

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Given the accompanying table: Supplement Given the accompanying table:  Supplement   Where numbers 1 through 4 indicate four supplements that must be added to sustain growth of the organism.Determine a possible metabolic pathway that would give the results seen for the four mutant strains,A through Where numbers 1 through 4 indicate four supplements that must be added to sustain growth of the organism.Determine a possible metabolic pathway that would give the results seen for the four mutant strains,A through

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Side groups of amino acids are typically classified under which of the following?

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Consider the roles of IF1,IF2,and IF3 during translation.Predict what the effect would be if IF1,IF2,and IF3 were mutated.

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The term peptidyl transferase relates to_________ .

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Creutzfeldt- Jakob,Huntington,Alzheimer,and Parkinson disease are all characterized with which part of protein synthesis?

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The accompanying drawing represents simultaneous transcription and translation in E.coli.The direction of the RNA polymerase is given by the arrow. The accompanying drawing represents simultaneous transcription and translation in E.coli.The direction of the RNA polymerase is given by the arrow.    a)Is the letter A nearer the 5' or the 3' end of the molecule? b)Is the letter B nearer the 5' or the 3' end of the molecule? c)Is the letter C nearer the 5' or the 3' end of the tRNA molecule? d)What is the S value for the large rRNA that is closest to the letter D? e)Which terminus N or  C)of the growing polypeptide chain is nearer to the letter E? a)Is the letter A nearer the 5' or the 3' end of the molecule? b)Is the letter B nearer the 5' or the 3' end of the molecule? c)Is the letter C nearer the 5' or the 3' end of the tRNA molecule? d)What is the "S" value for the large rRNA that is closest to the letter D? e)Which terminus N or C)of the growing polypeptide chain is nearer to the letter E?

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Explain why a eukaryotic mRNA that has begun to be degraded from the 3' end,but still has its complete coding region intact is not efficiently translated.

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Describe the structure of a tRNA molecule.Your answer should include a list of five important sites on the tRNA and two reasons why tRNA's modified bases are important.

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Which protein class directly controls many of the metabolic reactions within a cell?

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The primary structure of a protein is determined by_________ .

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The fi chain of adult hemoglobin is composed of 146 amino acids of a known sequence.In comparing the normal fi chain with the fi chain in sickle- cell hemoglobin,what alteration is one likely to find?

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What signals termination of translation in bacteria?

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What is the name of the protein that helps fold other proteins into their final and functional form?

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